About Us

Faculty

Marcus S. Cooke
Professor

Contact

Office: ISA 6206
Phone:
Email:

Bio


ORCID Homepage
Google Scholar Page

Education

B.Sc. (Hons). The Biomedical Sciences, Liverpool Polytechnic (England).
M.Sc. Molecular Pathology and Toxicology, University of Leicester (England).
Ph.D. Genomic Instability, University of Leicester/Medical Research Council Centre for Mechanisms for Human Toxicity (England).
Fellow of the Royal College of Pathologists (F.R.C.Path), London, England.

Research

The Oxidative Stress Group studies oxidative stress, and genomic instability: from basic mechanisms to translational application of validated biomarkers to study human health and disease.  Specifically, the formation and repair of damage to nuclear/mitochondrial DNA and the nucleotide precursor pools; and the development and application of DNA adductomics i.e. (i) the totality of DNA adducts in cellular DNA, and urine; (ii) the genome-wide mapping of DNA damage.

Cooke figure

This approach is currently being applied such areas as: the study of chemoresistance in ovarian cancer; modulation of host DNA damage responses by bacteria; urinary adductomics for the identification of cancer risk factors; the relative contribution of DNA repair pathways to maintaining genomic stability; and influence of skin type of the DNA damage response.

Translating such laboratory findings to the marketplace, is a priority, and actively pursued.  This has resulted in three US and one UK patents, license agreements, industry collaborations and a STTR award from NIEHS.

Recent Publications

2021
Gorini, F., Scala, G., Cooke, MS., Majello, B. and Amente, S.  (2021)  Towards a comprehensive view of 8-oxo-7,8-dihydro-2’-deoxyguanosine: highlighting the intertwined roles of DNA damage and epigenetics in genomic instability.  DNA Repair, 97, 103027-.

Chang, Y-J., Cooke, MS., Chen, Y-R., Yang, S-F., Lia, P-S., Hu, C-W., and Chao, M-R.  (2021)  Is high resolution a strict requirement for mass spectrometry-based cellular DNA adductomics?  Chemosphere, 274, 129991

Hu, C-W., Shih, Y-M., Chang, Y-J, Cooke, MS., Pan, C-H., Hu, C-H. and Chao, M-R.  (2021)  Alkylating and oxidative stresses in smoking and non-smoking patients with COPD: implications for lung carcinogenesis. Free Radical Biology and Medicine, 164, 99-106.

2020
Troccoli, CI., Samaranayake, GJ., Zhang, L., Huynh, M., Jayaraj, C., Ji, D., McPherson, L., Onishi, Y., Nguyen, DM., Robbins, DJ., Karbaschi, M., Cooke, MS., Barrientos, A., Kool, ET. and Rai, P. (2020) The existence of MTH1-independent 8-oxodGTPase activity in cancer cells as a compensatory mechanism against on-target effects of MTH1 inhibitors.  Molecular and Cellular Therapeutics, 19, 432-446. 

Guo, J., Turesky, RJ., Tarifa, A., DeCaprio, AP., Cooke, MS., Walmsley, SJ. and Villalta, PW. (2020) Development of a DNA Adductome Mass Spectral Database.  Chemical Research in Toxicology, 33, 4, 852-854.

Shih, BB., Farrar, M., Vail, A., Chao, M-R., Hu, C-W., Jones, GDD., Cooke, MS.* and Rhodes, LE.*  Influence of skin melanisation and ultraviolet radiation on biomarkers of systemic oxidative stress.  Free Radical Biology and Medicine 160, 40-46.
*Co-corresponding authors.

Burke, S.,* Cobb, J., Agarwal, R., Maddux, M. and Cooke, MS.*  (2020)  How Robust is the Evidence for a Role of Oxidative Stress in Autism Spectrum Disorders and Intellectual Disabilities?  Journal of Autism and Developmental Disorders.
*Co-corresponding authors.

Møller, P, Azqueta, A., Boutet-Robinet, E., Koppen, G., Bonassi, S., Milic, M., Gajski, G., Costa, S., Teixeira, JP., Pereira, CC., Dusinska, M., Godschalk, R., Brunborg, G., Giovannelli, L., Cooke, MS.,* Richling, E., Laffon, B., Valdiglesias, V., Basaran, N., del Bo’, C., Zegura, B., Stopper, H., Vodicka, P., Vodenkova, S., de Andrade, VM., Sramkova, M., Gabelova, A., Collins, A. and Langie, S.  (2020)  Minimum Information for reporting Comet Assay results (MIRCA) in cultured eukaryotic cells cultures, animals and non-mammalian species.  Nature Protocols. 15, (12) 3817–3826.
*Member of final writing/editorial team.

2019
Shih, Y-M., Cooke, MS., Pan, C-H., Chao, M-R. and Hu, C-W. (2019) Clinical relevance of guanine-derived urinary biomarkers of oxidative stress, determined by LC-MS/MS.  Redox Biology. 20, 556-565.

Tenenbaum, RB., Agarwal, R., Cooke, MS., Agarwal, M., Maddux, M. and Burke, SL. (2019) Utilisation of complementary and alternative therapies in youth with developmental disabilities. Evidence-Based Complementary and Alternative Medicine.

Ji, Y., Karbaschi, M. and Cooke, MS. (2019) Mycoplasma infection of cultured cells induces oxidative stress and attenuates cellular base excision repair activity.  Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 845, 403054-.

Alhegaili, AS., Ji, Y., Karbaschi, M., Tempest, HG., Sylvius, N., Blades, MJ. Jones, GDD. and Cooke, MS. (2019) Genome-wide adductomics analysis reveals heterogeneity in the induction and loss of cyclobutane thymine dimers across the both nuclear and mitochondrial genomes.  International Journal of Molecular Sciences, 20, 5112-.

Karbaschi, M., Ji, Y., Abdulwahed, AMS., Alohaly, A., Bedoya, JF., Burke, SL., Boulos, TM., Tempest, HG. and Cooke, MS. (2019) Evaluation of major steps in the conventional protocol for the comet assay.  International Journal of Molecular Sciences, 20, 6072,

Cooke, MS., Hu, C-W. and Chao, M-R. (2019) Editorial: Mass Spectrometry for Adductomic Analysis.  Frontiers Chemistry.  doi: 10.3389/fchem.2019.00794

Hu, C-W., Chang, Y-J., Cooke, MS. and Chao, M-R. (2019) DNA crosslinkomics: a tool for the comprehensive assessment of inter-strand crosslinks using high resolution mass spectrometry.  Analytical Chemistry. 91, 15193-15203. 
(an NIEHS Extramural Paper of the Month, Jan 2020).

2018
Olinski, R., Gackowski, D. and Cooke, MS. (2018) Endogenously generated DNA nucleobase modifications: source, and significance as possible biomarkers of malignant transformation risk, and role in anticancer therapy. BBA. Reviews on Cancer 1869, 29-41.

Delinassios, G., Karbaschi, M., Cooke, MS*. and Young, AR*. (2018) Vitamin E inhibits the UVAI induction of “light” and “dark” cyclobutane pyrimidine dimers, and oxidatively generated DNA damage, in keratinocytes. Scientific Reports 8, 423,
*Co-corresponding authors.

Kim, G., Karbaschi, M., Cooke, MS. and Gaitas, A. (2018) Evaluation of three light based whole blood pathogen inactivation methods enabled by a recirculating flow system.  Photochemistry and Photobiology94, 744-751.  DOI: 10.1111/php.12899

Cooke, MS.  (2018) Mycosporine-like amino acids: does Nature make a better sunscreen?  (Invited commentary.)  British Journal of Dermatology 178, 1239.

Hu, C-W., Cooke, MS., Chang, Y-J. and Chao, M-R. (2018) Direct-acting DNA ethylating agents in cigarette smoke primarily originate by transfer from the tobacco itself, not combustion.  Journal of Hazardous Materials. 358, 397-404.

Chang, Y-J., Cooke, MS., Hu, C-W. and Chao, M-R. (2018) Novel approach to integrated DNA adductomics for the assessment of in vitro and in vivo environmental exposures.  Archives of Toxicology. 92, 2665-2680.

Chao, M-R*., Cooke, MS*., Chang, Y-J., Pan, C-H, Liu, H-H. Yang, H-J., Chiang, Y-C. and Hu, C-W. (2018) Children are particularly vulnerable to environmental tobacco smoke exposure: evidence from biomarkers of tobacco-specific nitrosamines, and oxidative stress.  Environment International. 120, 238-245.
*Contributed equally.

Shih, BB., Farrar, MD., Cooke, MS., Osman, J., Langton, AK., Kift, R., Webb, AR., Berry, JL., Watson, REB., Vail, A., de Gruijl, FR. and Rhodes, LE. (2018) Sub-sunburn produces vitamin D and DNA damage equivalently but with absent to strong damage gradients in human skin types I-VI.  Journal of Investigative Dermatology. 138, 2244-2252.

Cooke, MS*., Chao, M-R., Chang, Y-J. and Hu, C-W*. (2018) Urinary DNA Adductomics – A Novel Approach for Exposomics.  Environment International. 121, 1033-1038. 
*Contributed equally.

2017
Egea, J., Fabregat, I., Frapart, Y.M., Ghezzi, P., Görlach, A., Kietzmann, T., Kubaichuk, K., Knaus, U. G., Lopez, M.G., Olaso-Gonzalez, G., Petry, A., Schulz, R., Vina, J., Winyard, P., Abbas,K., Ademowo, S., Afonso, C.B., Andreadou, L., Antelmann, H.,Antunes, F., Aslan, M., Bachschmid, M.M., Barbosa, R. M., Belousov, V., Berndt, C., Bernlohr, D., Bertrán, E., Bindoli, A., Bottari, S.P., Brito, P.M., Carrara, G., Casas, A.I., Chatzi, A., Chondrogianni, N., Conrad, M., Cooke, M.S., Costa. J.G., 34, Cuadrado, A., Dang, P.M., Smet, B.D., Debelec–Butuner, B., Dia, I., Dunn, J.D., Edson, A.J, Assar, M.E., Benna, J.E., Ferdinandy, P., Fernandes, A.S., Fladmark, K.E., Förstermann, U., Giniatullin, R., Giricz, Z., Görbe, A., Griffiths, H., Hampl, V., Herget, J., Hernansanz-Agustín, P., Hillion, M., Huang, J., Ilikay, S., Jansen-Dürr, P., Jaquet, V., Joles, J.A., Kalyanaraman, B., Kaminskyy, D., Karbaschi, M., Kleanthous, M., Klotz, L.O., Korac, B.,Korkmaz, K.S., Koziel, R., Kracun, D., Krause, K.H., Kren, V., Krieg, T., Laranjinha, J., Lazou, A., Li, H., Martínez-Ruiz, A., Matsui, R., McBean, G.J., Meredith, S.P., Messens, J., Miguel, V., Mikhed, Y., Milisav, I., Milkovic, L., Miranda-Vizuete, A.,Mojovic, M., Monsalve, M., Mouthuy, P.A., Mulvey, J., Münzel, T., Muzykantov, V., Nguyen, I.T.N., Oliveira, N.G., Palmeira, C.M., Papaevgeniou, N., Pavicevic, A., Pedre, B., Peyrot, F., Phylactides, M., Pircalabioru, G.G., Pitt, A.R., Poulsen, H.E., Prieto, I., Rigobello, M.P., Robledinos-Antón, N., Rodríguez-Mañas, L., Rolo, A.P., Rousset, F., Ruskovska, T.,Saraiva, N., Sasson, S., Schröder, K., Semen, K., Seredenina, T., Shakirzyanova, A., Smith, G.L., Soldati, T., Sousa, B.C., Spickett, C.M., Stancic, A., Stasia, M.J., Steinbrenner, H., Stepanic, V., Steven, S., Tokatlidis, K., Tuncay, E., Turan, B., Ursini, F., Vacek, J., Vajnerova, O., Valentová, K., Varisli, L., Veal, E.A., Weber, A., Yalçin, A.S., Yelisyeyeva, O., Žarkovic, N., Zatloukalová, M., Zielonka, J., Touyz, R.M., Papapetropoulos, A., Grune, T., Lamas, S.,Schmidt, H.H., Lisa, F.D., and Daiber, A.  (2017)  Position paper by the EU-ROS consortium on RONS in health and disease: European Contribution to the study of ROS: A Summary of the Findings and Prospects for the Future from the COST Action BM1203 (EU-ROS). Redox Biology. 13, 94-162.

2016
Rossner, Jr., P., Orhan, H., Santella, RM., Sakai, K., Koppen, G., Ambroz, A., Rossnerova, A., Sram, RJ., Ciganek, M., Neca, J. and Cooke, MS.  (2016)  Urinary 8-oxo-7,8-dihydro-2'-deoxyguanosine analysis by an improved ELISA: does assay standardization reduce inter-laboratory variability?  Free Radic. Biol. Med.  95, 169-179.

Felton, SJ., Cooke, MS., Kift, R., Berry, JL., Webb, AR., Lam, PMW., de Gruijl, FR., Vail, A. and Rhodes, LE.  (2016)  Concurrent beneficial (vitamin D production) and hazardous (cutaneous DNA damage) impact of low level summer sunlight exposures.  British Journal of Dermatology 175, 1320-1328.

Evans, MD., Misty, V., Singh, R., Gackowski, D., Rózalskic, R., Siomek-Goreckac, A., Phillips, DH., Zuod, J., Mullenders, L., Pines, A., Nakabeppu, Y., Sakumi, K., Sekiguchi, M., Tsuzuki, T., Bignami, M., Olinski, R. and Cooke, MS.  (2016)  Nucleotide excision repair of oxidised genomic DNA is not the primary source of urinary 8-oxo-7,8-dihydro-2’-deoxyguanosine. Free Radic. Biol. Med.  99, 385-391.

2015
Hu, C-W., Cooke, MS., Tsai, Y-H. and Chao, M-R.  (2015)  Comparison of 8-oxo-7,8-dihydroguanine and 8-oxo-7,8-dihydro-2'-deoxyguanosine concentrations in various human body fluids measured by isotope-dilution LC-MS/MS.  Arch. Toxicol. 89, 201-210.  DOI: 10.1007/s00204-014-1255-1

Karbaschi, M., Macip, S, Mistry, V., Abbas, HHK, Delinassios, GJ., Evans, MD., Young, AR. and Cooke, MS.  (2015)  Rescue of cells from apoptosis increases DNA repair in UVB exposed cells with implications for the DNA damage response.  Toxicol. Res. 4, 725-738. DOI: 10.1039/c4tx00197d.